ClustalW

From Bioinformatist

Jump to: navigation, search

Contents

ClustalW

Multiple Sequence Alignment Program

For details and citation purposes see paper
Clustal W and Clustal X version 2.0", Larkin M., et al. Bioinformatics 2007 23(21):2947-2948
http://bioinformatics.oxfordjournals.org/cgi/content/full/23/21/2947

Name ClustalW
Summary Multiple Sequence Alignment Program
Version 2.0.12
License GPL
URL http://www.clustal.org/

Requirements

  1. gcc
  2. gcc-c++
  3. make

Installation

Prep

tar zxvf clustalw-2.0.12.tar.gz
Fix line-ending in LICENSE
sed -i 's/\r//' LICENSE

Build

cd clustalw-2.0.12/
./configure
make

Install

As root

make install
As user (no root privileges) Copy the clustalw2 binary
cd src
cp clustalw2 /home/user/bin
The program can then be executed using the following command from a terminal
clustalw2

Distribution specific notes

Ubuntu

Debian

openSUSE

Fedora

Troubleshooting

Common problems and solutions

Advanced configuration

Additional configure options, applying patches etc.,

Links

Personal tools