DSSP

From Bioinformatist.com

Contents 1 Introduction 2 Package details 3 Installation 3.1 Linux 3.2 Windows 4 Running 5 Troubleshooting

Introduction

DSSP is a program for secondary structure assignment from PDB structures.

Package details

* Source Code: -
* Version: -
* License: Academic (http://swift.cmbi.ru.nl/gv/dssp/license.html)
* Developer(s):  Wolfgang Kabsch and Chris Sander
* Website: http://swift.cmbi.ru.nl/gv/dssp/
* Download: Linux: http://swift.cmbi.ru.nl/gv/dssp/dsspcmbi Windows: http://swift.cmbi.ru.nl/gv/dssp/DSSPCMBI.EXE
* Requirements:
* FAQ:

Installation

Linux

1. Download the precompiled executable from the download location after obtaining the required license.
   
   
2. Copy the executable "dsspcmbi"  to /usr/bin or /usr/local/bin
   

   cp /data/dsspcmbi /usr/local/bin/

   cd /usr/local/bin

   ln -s dsspcmbi dssp

Windows

Running

DSSP can be run from the terminal

dssp -v file.pdb file.dssp

More detailed usage description at http://swift.cmbi.ru.nl/gv/dssp/descrip.html

Troubleshooting